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  "Title": "Analysis of High-Dimensional Categorical Data Such as SNP Data",
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  "Authors@R": "c(person(given = \"Holger\", family = \"Schwender\", role = c(\"aut\", \"cre\"),\nemail = \"holger.schw@gmx.de\"),\nperson(given = c(\"Arno\"), family = \"Fritsch\", role = \"ctb\"))",
  "Author": "Holger Schwender [aut, cre], Arno Fritsch [ctb]",
  "Maintainer": "Holger Schwender <holger.schw@gmx.de>",
  "Description": "Tools for the analysis of high-dimensional data\ndeveloped/implemented at the group \"Statistical Complexity\nReduction In Molecular Epidemiology\" (SCRIME). Main focus is on\nSNP data. But most of the functions can also be applied to\nother types of categorical data.",
  "License": "GPL-2",
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  "Date/Publication": "2026-01-25 21:34:14 UTC",
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    "colEpistatic",
    "computeContCells",
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    "knncatimpute",
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    "manhattan2Mats",
    "maximum2Mats",
    "minkowski2Mats",
    "pamCat",
    "pcc",
    "pcc2Mats",
    "predictFBLR",
    "recodeAffySNP",
    "recodeSNPs",
    "rowCATTs",
    "rowChisq2Class",
    "rowChisqMultiClass",
    "rowChisqStats",
    "rowCors",
    "rowEpistatic",
    "rowFreqs",
    "rowHWEs",
    "rowMAFs",
    "rowMsquares",
    "rowScales",
    "rowTables",
    "rowTrendFuzzy",
    "rowTrendStats",
    "shortenGeneDescription",
    "showChanges",
    "simulateSNPcatResponse",
    "simulateSNPglm",
    "simulateSNPs",
    "smc",
    "smc2Mats",
    "snp2bin"
  ],
  "_help": [
    {
      "page": "abf",
      "title": "Approximate Bayes Factor",
      "topics": [
        "abf"
      ]
    },
    {
      "page": "analyse.models",
      "title": "Summarize MCMC sample of Bayesian logic regression models",
      "topics": [
        "analyse.models"
      ]
    },
    {
      "page": "buildSNPannotation",
      "title": "Construct Annotation for Affymetrix SNP Chips",
      "topics": [
        "buildSNPannotation"
      ]
    },
    {
      "page": "colEpistatic",
      "title": "Cordell's Test for Epistatic Interactions",
      "topics": [
        "colEpistatic",
        "print.colEpi",
        "rowEpistatic"
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    },
    {
      "page": "computeContCells",
      "title": "Pairwise Contingency Tables",
      "topics": [
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      ]
    },
    {
      "page": "computeContClass",
      "title": "Rowwise Contigency Tables",
      "topics": [
        "computeContClass"
      ]
    },
    {
      "page": "fblr",
      "title": "Full Bayesian Logic Regression for SNP Data",
      "topics": [
        "fblr",
        "fblr.weight"
      ]
    },
    {
      "page": "gknn",
      "title": "Generalized k Nearest Neighbors",
      "topics": [
        "gknn"
      ]
    },
    {
      "page": "identifyMonomorphism",
      "title": "Identification of Constant Variables",
      "topics": [
        "identifyMonomorphism"
      ]
    },
    {
      "page": "knncatimpute",
      "title": "Missing Value Imputation with kNN",
      "topics": [
        "knncatimpute"
      ]
    },
    {
      "page": "knncatimputeLarge",
      "title": "Missing Value Imputation with kNN for High-Dimensional Data",
      "topics": [
        "knncatimputeLarge"
      ]
    },
    {
      "page": "pamCat",
      "title": "Prediction Analysis of Categorical Data",
      "topics": [
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        "print.pamCat"
      ]
    },
    {
      "page": "pcc",
      "title": "Pearson's Contingency Coefficient",
      "topics": [
        "pcc"
      ]
    },
    {
      "page": "predict.pamCat",
      "title": "Predict Method for pamCat Objects",
      "topics": [
        "predict.pamCat"
      ]
    },
    {
      "page": "predictFBLR",
      "title": "Predict Case Probabilities with Full Bayesian Logic Regression",
      "topics": [
        "predictFBLR"
      ]
    },
    {
      "page": "recodeAffySNP",
      "title": "Recoding of Affymetrix SNP Values",
      "topics": [
        "recodeAffySNP"
      ]
    },
    {
      "page": "recodeSNPs",
      "title": "Recoding of SNP Values",
      "topics": [
        "recodeSNPs"
      ]
    },
    {
      "page": "rowCATTs",
      "title": "Rowwise Cochran-Armitage Trend Test Based on Tables",
      "topics": [
        "rowCATTs"
      ]
    },
    {
      "page": "rowChisq2Class",
      "title": "Rowwise Pearson's ChiSquare Test Based on Tables",
      "topics": [
        "rowChisq2Class",
        "rowChisqMultiClass"
      ]
    },
    {
      "page": "rowChisqStats",
      "title": "Rowwise Pearson's ChiSquare Statistic",
      "topics": [
        "rowChisqStats"
      ]
    },
    {
      "page": "rowCors",
      "title": "Rowwise Correlation with a Vector",
      "topics": [
        "rowCors"
      ]
    },
    {
      "page": "rowFreqs",
      "title": "Rowwise Frequencies",
      "topics": [
        "rowFreqs"
      ]
    },
    {
      "page": "rowHWEs",
      "title": "Rowwise Test for Hardy-Weinberg Equilibrium",
      "topics": [
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      ]
    },
    {
      "page": "rowMAFs",
      "title": "Rowwise Minor Allele Frequency",
      "topics": [
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    },
    {
      "page": "rowMsquares",
      "title": "Rowwise Linear Trend Test Based on Tables",
      "topics": [
        "rowMsquares"
      ]
    },
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      "page": "rowScales",
      "title": "Rowwise Scaling",
      "topics": [
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      ]
    },
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      "title": "Rowwise Tables",
      "topics": [
        "rowTables"
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    },
    {
      "page": "rowTrendFuzzy",
      "title": "Trend Test for Fuzzy Genotype Calls",
      "topics": [
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        "rowTrendFuzzy"
      ]
    },
    {
      "page": "rowTrendStats",
      "title": "Rowwise Linear Trend Tests",
      "topics": [
        "rowTrendStats"
      ]
    },
    {
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      "title": "Shorten the Gene Description",
      "topics": [
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      ]
    },
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      "title": "Displaying Changes",
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        "showChanges"
      ]
    },
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      "title": "Simulation of SNP Data with Categorical Response",
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        "simulateSNPcatResponse"
      ]
    },
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